Showing : copy number • reset
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cn.MOPS output - mean/median of what?
cn.MOPS CNV copy number
5.9 years ago liorglic ▴ 10
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how to analyze CNV data
copy number
8.5 years ago mms140130 • 0
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1.0k
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How to combine CGHcall objects
cghcall r cgh copy number
8.7 years ago kitcurtius • 0
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1.8k
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Batch Correction and Normalization for champ.CNA
bioconductor ChAMP copy number batch effect normalization
updated 8.9 years ago by ▴ 10 • written 8.9 years ago by • 0
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champ.CNA error (Error in sort(abs(diff(genomdat)))[1:n.keep])
ChAMP champ copy number
9.0 years ago apmishra • 0
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Calling amplifications and deletions from CopywriteR output
CopywriteR copy number
updated 9.9 years ago by ▴ 170 • written 9.9 years ago by • 0
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Why are the raw copy numbers maxed at 5 and minned at 0 ?
crlmm copy number
10.8 years ago kforner • 0
7 results • Page 1 of 1
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Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
Yes, making a group factor simplifies things, and you will need a new column for disease subject to avoid having a design that is not full …
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Yes, Gender is more a nuisance factor in our experiment, and our primary interest is to compare groups. I will just use filter…
Comment: Joining different datasets and analyzing using the group-specific condition effe by jason.chai • 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
Comment: Questions about bacon QC and correction on EWAS results by sup0903 • 0
This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Votes
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
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